=> Bootstrap dependency digest>=20010302: found digest-20160304
===> Building for primer3-2.3.6
g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2  primer3_boulder_main.c
g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2  -o format_output.o format_output.c
g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2  -o read_boulder.o read_boulder.c
clang++: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated]
clang++: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated]
clang++: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated]
format_output.c:418:48: warning: comparison of address of 'retval->rev' not equal to a null pointer is always true [-Wtautological-pointer-compare]
            if (pa->pick_right_primer && &retval->rev != NULL 
                                          ~~~~~~~~^~~    ~~~~
format_output.c:429:47: warning: comparison of address of 'retval->fwd' not equal to a null pointer is always true [-Wtautological-pointer-compare]
            if (pa->pick_left_primer && &retval->fwd != NULL 
                                         ~~~~~~~~^~~    ~~~~
format_output.c:851:45: warning: comparison of address of 'retval->fwd' not equal to a null pointer is always true [-Wtautological-pointer-compare]
    if ((pa->pick_left_primer) && (&retval->fwd != NULL )
                                    ~~~~~~~~^~~    ~~~~
format_output.c:858:48: warning: comparison of address of 'retval->intl' not equal to a null pointer is always true [-Wtautological-pointer-compare]
    if ((pa->pick_internal_oligo) && (&retval->intl != NULL )
                                       ~~~~~~~~^~~~    ~~~~
format_output.c:865:46: warning: comparison of address of 'retval->rev' not equal to a null pointer is always true [-Wtautological-pointer-compare]
    if ((pa->pick_right_primer) && (&retval->rev != NULL )
                                     ~~~~~~~~^~~    ~~~~
format_output.c:888:43: warning: comparison of address of 'retval->fwd' not equal to a null pointer is always true [-Wtautological-pointer-compare]
  if ((pa->pick_left_primer) && (&retval->fwd != NULL )
                                  ~~~~~~~~^~~    ~~~~
format_output.c:907:46: warning: comparison of address of 'retval->intl' not equal to a null pointer is always true [-Wtautological-pointer-compare]
  if ((pa->pick_internal_oligo) && (&retval->intl != NULL )
                                     ~~~~~~~~^~~~    ~~~~
format_output.c:926:44: warning: comparison of address of 'retval->rev' not equal to a null pointer is always true [-Wtautological-pointer-compare]
  if ((pa->pick_right_primer) && (&retval->rev != NULL )
                                   ~~~~~~~~^~~    ~~~~
g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2  -o print_boulder.o print_boulder.c
clang++: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated]
g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -Wno-deprecated  -o libprimer3.o libprimer3.c
8 warnings generated.
g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -o p3_seq_lib.o p3_seq_lib.c
clang++: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated]
g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2  -o dpal_primer.o dpal.c
clang++: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated]
dpal.c:368:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
    register int i, j, k, mg, c;
    ^~~~~~~~~
dpal.c:368:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
    register int i, j, k, mg, c;
    ^~~~~~~~~
dpal.c:368:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
    register int i, j, k, mg, c;
    ^~~~~~~~~
dpal.c:368:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
    register int i, j, k, mg, c;
    ^~~~~~~~~
dpal.c:368:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
    register int i, j, k, mg, c;
    ^~~~~~~~~
dpal.c:369:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
    register int gap = in->gap, gapl = in->gapl, max_gap = in->max_gap;
    ^~~~~~~~~
dpal.c:369:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
    register int gap = in->gap, gapl = in->gapl, max_gap = in->max_gap;
    ^~~~~~~~~
dpal.c:369:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
    register int gap = in->gap, gapl = in->gapl, max_gap = in->max_gap;
    ^~~~~~~~~
dpal.c:594:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
    register int i, j, k, mg, mgy, c;
    ^~~~~~~~~
dpal.c:594:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
    register int i, j, k, mg, mgy, c;
    ^~~~~~~~~
dpal.c:594:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
    register int i, j, k, mg, mgy, c;
    ^~~~~~~~~
dpal.c:594:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
    register int i, j, k, mg, mgy, c;
    ^~~~~~~~~
dpal.c:594:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
    register int i, j, k, mg, mgy, c;
    ^~~~~~~~~
dpal.c:594:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
    register int i, j, k, mg, mgy, c;
    ^~~~~~~~~
dpal.c:595:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
    register int gap = in->gap, gapl = in->gapl, max_gap = in->max_gap;
    ^~~~~~~~~
dpal.c:595:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
    register int gap = in->gap, gapl = in->gapl, max_gap = in->max_gap;
    ^~~~~~~~~
dpal.c:595:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
    register int gap = in->gap, gapl = in->gapl, max_gap = in->max_gap;
    ^~~~~~~~~
dpal.c:760:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
    register int i, j;
    ^~~~~~~~~
dpal.c:760:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
    register int i, j;
    ^~~~~~~~~
dpal.c:761:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
    register int gap = in->gap;
    ^~~~~~~~~
dpal.c:762:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
    register int smax;           /* The optimum score. */
    ^~~~~~~~~
dpal.c:763:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
    register int score;          /* Current score. */
    ^~~~~~~~~
dpal.c:764:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
    register int a;
    ^~~~~~~~~
dpal.c:852:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
  register int i, j, k;
  ^~~~~~~~~
dpal.c:852:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
  register int i, j, k;
  ^~~~~~~~~
dpal.c:852:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
  register int i, j, k;
  ^~~~~~~~~
dpal.c:853:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
  register int gap = in->gap;
  ^~~~~~~~~
dpal.c:854:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
  register int smax;           /* The optimum score. */
  ^~~~~~~~~
dpal.c:855:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
  register int score;          /* Current score. */
  ^~~~~~~~~
dpal.c:856:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
  register int a, t;
  ^~~~~~~~~
dpal.c:856:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
  register int a, t;
  ^~~~~~~~~
dpal.c:1049:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
  register const unsigned char *p;
  ^~~~~~~~~
dpal.c:1072:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
  register int i, j;
  ^~~~~~~~~
dpal.c:1072:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
  register int i, j;
  ^~~~~~~~~
dpal.c:1073:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
  register int gap = in->gap;
  ^~~~~~~~~
dpal.c:1074:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
  register int smax;           /* The optimum score. */
  ^~~~~~~~~
dpal.c:1075:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
  register int score;          /* Current score. */
  ^~~~~~~~~
dpal.c:1076:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
  register int a;
  ^~~~~~~~~
38 warnings generated.
g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -ffloat-store  -o thal_primer.o thal.c
clang++: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated]
clang++: warning: optimization flag '-ffloat-store' is not supported [-Wignored-optimization-argument]
thal.c:426:13: error: comparison between pointer and integer ('int' and 'const unsigned char *')
   if ('\0' == oligo_f) {
       ~~~~ ^  ~~~~~~~
thal.c:431:13: error: comparison between pointer and integer ('int' and 'const unsigned char *')
   if ('\0' == oligo_r) {
       ~~~~ ^  ~~~~~~~
thal.c:2407:4: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
   register char s;
   ^~~~~~~~~
thal.c:2408:4: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
   register char e;
   ^~~~~~~~~
2 warnings and 2 errors generated.
Makefile:192: recipe for target 'thal_primer.o' failed
gmake: *** [thal_primer.o] Error 1
gmake: *** Waiting for unfinished jobs....
*** Error code 2

Stop.
bmake[1]: stopped in /usr/pkgsrc/biology/primer3
*** Error code 1

Stop.
bmake: stopped in /usr/pkgsrc/biology/primer3